Northern Blot Oligonucleotype Hybridization

  1. Prewash blot in 0.1X SSC/0.1% SDS for 1 hour at 65ºC.
  2. Remove prewash.
  3. Prehyb blot for >1 hour in pre-hybridization solution at hybridization temperatuer (see below).
  4. Remove pre-hybridization buffer.
  5. Add probe to blot. Hybridize for >6 hours, at least 15ºC below estimated Tm.
         Tm(ºC) = 4(G + C) + 2(A + T)
  6. Pour probe off of blot. Store probe at -20C.
  7. Wash blot in 6X SSC, 0.1% SDS
    Three five minute room temperature washes.
    One 20 minute wash at 10ºC below estimated Tm.
  8. Dry blot by pressing between paper towels.
  9. Wrap blot in Saran Wrap.
  10. Expose on film or PhosphorImager cassette.

Pre-Hybridization Buffer

5 mL 100X Denhart's
15 mL 20X SSC
0.5 mL 10% SDS
29.5 mL H20


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Last updated 8/22/06