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Northern
Blot Oligonucleotype Hybridization
- Prewash blot in 0.1X SSC/0.1% SDS for 1 hour at 65ºC.
- Remove prewash.
- Prehyb blot for >1 hour in pre-hybridization solution
at hybridization temperatuer (see below).
- Remove pre-hybridization buffer.
- Add probe to blot. Hybridize for >6 hours, at least 15ºC
below estimated Tm.
Tm(ºC) = 4(G + C) + 2(A + T)
- Pour probe off of blot. Store probe at -20C.
- Wash blot in 6X SSC, 0.1% SDS
Three five minute room temperature washes.
One 20 minute wash at 10ºC below estimated Tm.
- Dry blot by pressing between paper towels.
- Wrap blot in Saran Wrap.
-
Expose on film or PhosphorImager cassette.
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