Genomics, Sequence Searches, and Sequence Analysis

• The Molecular Biology Database Collection is an updated compilation of almost 300 biological database resources.
  • category listing
  • alphabetical listing
  • search summary papers
    
    
• ExPASy Molecular Biology Server is a huge compendium of molecular biology databases, bioinformatics, and proteomic tools.
  
  
• Biotechnology Computing Facility biological computing resources at UA
  • GCG Support Page
  • Sequence Transfer Tool
  • Sequence File Format Conversion Tool

• GATC (Genetic Analysis and Technology Core
  • Oligo Calculator calculates Tm and other properties for any oligo sequence
  • DNA Sequencing Facility
  • Fragment Analysis Facility
    
• DoPrimer design PCR and sequencing primers online for free
• FuzzyFinder Web tool for doing quick comparison of two sequences
• MWG Biotech Oligonucleotide Ordering Page (requires ID, password)
• Entrez Sequence database brower at NCBI
• BLAST searches at NCBI
• Submit sequences to databases with BankIt or Sequin
• Protein Data Bank at Brookhaven National Laboratory
• C. elegans genome project site at The Sanger Centre
• C. elegansBLAST server (at wormbase)
• euGenes Genomic Information for Eukaryotic Model Organisms
  • C. elegans genes
• Nematode Expression Pattern Database
• Microarray publications e-library, from Arrayit.com
• Vector sequences for C. elegans mapping and sequencing projects
• Expression Vector kits from Andy Fire's lab
• XREFdb a database that cross-references model organism genes with mammalian phenotypes
• Biology Workbench an easy interface for sequence database searches and analysis (UserID is Wardlab)
• Textco, Inc. makers of Gene Construction Kit, Gene Inspector, & other software